Browsing by Author "Steven Lommel, Committee Member"

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Spectroscopic Characterization of the Function and Mechanism of Dehaloperoxidase
(2004-12-01) Belyea, Jennifer Lee; Edmond Bowden, Committee Member; Steven Lommel, Committee Member; Stefan Franzen, Committee Chair
The research presented in this thesis focuses on three main areas of work with dehaloperoxidase, DHP. The development of a viable source of recombinant DHP is discussed first. Enzymatic activity of DHP is the second area of research discussed followed by ligand binding studies. All of this research is done in the attempt to understand the structure function relationship within DHP. DHP's globin structure and peroxidase activity is the source of our interest in studding the structure function relationship in DHP. Typically, globins are not peroxidases. In DHP's case a unique heme active site, that is not common for globins or peroxidases, alters the ligand binding and the Poulos-Kraut push/pull mechanism of compound I formation. Specifically DHP has a distal valine residue that is unable to function as the residue that is responsible for the abstraction of a proton. Typically, the distal residue in both globins and peroxidases is a histidine. The distal histidine is credited with the abstraction of the proton in the pull step of the Poulous-Kraut push/pull mechanism.
Structural Studies of Inhibitor and Substrate Binding in the Hemoglobin Dehaloperoxidase
(2010-08-07) Davis, Michael Foster; Tatyana Smirnova, Committee Member; Steven Lommel, Committee Member; Edmond Bowden, Committee Member; Stefan Franzen, Committee Chair
Dehaloperoxidase (DHP) is a dual function heme protein found in the marine polychaete Amphitrite ornata. A. ornata is filter feeding worm that inhabits estuary inlets alongside other annelids such as Notomastus lobatus and Thelepus crispus, which secrete various haloaromatics theoretically as a means of territorial protection. N. lobatus, in particular, expels mono-, di-, and trihalogentated phenols. Even though DHP is one of two hemoglobins found in A. ornata, the protein possesses significant peroxidase activity and is capable of oxidatively dehalogenating certain halophenols found in its environment. The ability of DHP to bind monohalogenated phenols in an internal distal cavity separates the protein from any other known globin. A variety of spectroscopic and enzymatic techniques have been utilized to probe halophenol binding in DHP. In order to perform these techniques, codon optimization of the DHP gene was first performed. 1H NMR experiments on low-spin metcyano DHP revealed separate modes of binding between mono-, di-, and trihalogentated phenols. Specifically it was found that binding of mono- and dihalogenated phenols occurs in the internal binding pocket, while trihalogenated phenols bind at a second, external site. This led to enzymatic studies that revealed inhibition of DHP peroxidase activity upon monohalogenated phenol binding in the internal pocket. NMR experiments on the protein backbone of 13C and 15N labeled DHP show trihalogenated substrates induce chemical shift deviations in the distal histidine H55 NÎµH and amide protons near tryptophan 120. This indicates binding of trihalophenols may occur on the external side of H55 resulting in allosteric changes at the dimer interface, or that binding may occur directly at W120.